- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: T.123, D.146, R.149, D.198
- Ligands: GNP.1
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.123, H2O.1, H2O.1
MG.5: 4 residues within 4Å:- Chain B: S.103, R.129, D.191
- Ligands: GNP.4
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:S.103, H2O.3, H2O.3, H2O.4
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: S.170, Y.171, T.172
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.171, A:T.172, A:T.172
SO4.6: 2 residues within 4Å:- Chain B: R.295, S.296
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.296
- Water bridges: B:S.296, B:S.296
SO4.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)SO4.8: 2 residues within 4Å:- Chain B: R.88, R.181
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.88, B:R.181
SO4.9: 2 residues within 4Å:- Chain B: K.167, D.168
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.168
- Salt bridges: B:K.167
SO4.10: 4 residues within 4Å:- Chain B: M.246, A.247, Q.248, T.249
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.248, B:T.249
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Juaire, K.D. et al., Structural and Functional Impact of SRP54 Mutations Causing Severe Congenital Neutropenia. Structure (2021)
- Release Date
- 2020-09-23
- Peptides
- Signal recognition particle 54 kDa protein: A
Signal recognition particle receptor subunit alpha: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Juaire, K.D. et al., Structural and Functional Impact of SRP54 Mutations Causing Severe Congenital Neutropenia. Structure (2021)
- Release Date
- 2020-09-23
- Peptides
- Signal recognition particle 54 kDa protein: A
Signal recognition particle receptor subunit alpha: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
H