SMTL ID : 6y3j.1

RING-DTC domains of Deltex 2, bound to ADP-ribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.1: 11 residues within 4Å: Chain A: R.148, T.179, S.180, S.181, T.182, V.190, W.191, H.195, H.196, T.198, H.207 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.181, A:S.181, A:T.182, A:T.182, A:V.189, A:W.191, A:H.195, A:T.198, A:T.198, A:H.207, A:H.207 Salt bridges: A:R.148, A:R.148 pi-Stacking: A:H.207, A:H.207

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.58, H.60, C.82, S.84, C.85 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.58, A:H.60, A:C.82, A:S.84, A:C.85 ZN.3: 4 residues within 4Å: Chain A: C.25, C.28, H.63, C.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.25, A:C.28, A:H.63, A:C.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed, S.F. et al., DELTEX2 C-terminal domain recognizes and recruits ADP-ribosylated proteins for ubiquitination. Sci Adv (2020)

Release Date

2020-09-02

Peptides

Probable E3 ubiquitin-protein ligase DTX2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable E3 ubiquitin-protein ligase DTX2

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