SMTL ID : 6y3p.1

Crystal structure of the C-terminal domain from K. lactis Pby1, an ATP-grasp enzyme interacting with the mRNA decapping enzyme Dcp2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.22, P.23, R.26, K.360 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.26, A:K.360 SO4.2: 2 residues within 4Å: Chain A: P.289, S.290 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.290 Water bridges: A:H.291, A:H.291, A:R.293 SO4.3: 3 residues within 4Å: Chain A: K.286, S.290, R.293 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.293 Salt bridges: A:K.286, A:R.293 SO4.4: 2 residues within 4Å: Chain A: S.38, R.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.39 Salt bridges: A:R.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charenton, C. et al., Pby1 is a direct partner of the Dcp2 decapping enzyme. Nucleic Acids Res. (2020)

Release Date

2020-04-29

Peptides

KLLA0B12012p: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

KLLA0B12012p