SMTL ID : 6y5f.1

Crystal structure of the envelope glycoprotein prefusion complex of Andes virus - Mutant H953F

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 10 residues within 4Å: Chain A: L.29, N.118, T.120, H.121, I.268, Q.269, G.301, V.302, P.303 Chain B: F.647 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.2: 7 residues within 4Å: Chain A: P.260, N.330 Chain B: Y.492, T.498, S.499, K.500, F.502 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.499, B:F.502

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 3 residues within 4Å: Chain B: S.675, N.677, D.694 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 2 residues within 4Å: Chain B: K.554, H.567 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.554, B:H.567 PO4.5: 2 residues within 4Å: Chain B: H.471, K.542 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.471, B:K.542

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serris, A. et al., The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism. Cell (2020)

Release Date

2020-10-14

Peptides

Envelope polyprotein,Envelope polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Envelope polyprotein,Envelope polyprotein