SMTL ID : 6y5w.1

Crystal structure of the envelope glycoprotein complex of Andes virus in a near postfusion conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 12 residues within 4Å: Chain A: L.29, N.118, T.120, H.121, Q.272, A.300, G.301, V.302, P.303 Chain B: D.519, G.646, F.647 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.272 Hydrophobic interactions: A:L.29

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 7 residues within 4Å: Chain A: L.257, V.258, P.260, N.330 Chain B: Y.492, T.498, K.500 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.492, B:Y.492 Water bridges: B:S.499, B:K.500, B:Y.492, B:Y.492 NAG-NAG-BMA-MAN.3: 8 residues within 4Å: Chain A: G.167, Q.168 Chain B: Q.604, G.605, G.606, I.607, K.670, N.677 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.168, A:G.167, B:K.670 Hydrophobic interactions: B:I.607

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serris, A. et al., The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism. Cell (2020)

Release Date

2020-10-14

Peptides

Envelope polyprotein,Envelope polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Envelope polyprotein,Envelope polyprotein