- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-pentamer
- Ligands
- 3 x IMD: IMIDAZOLE(Non-covalent)
- 51 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 7 residues within 4Å:- Chain A: T.58, V.59, A.60, D.66, V.67, P.68
- Chain E: H.117
Ligand excluded by PLIPEDO.3: 6 residues within 4Å:- Chain A: H.117
- Chain B: T.58, A.60, D.66, V.67, P.68
Ligand excluded by PLIPEDO.4: 3 residues within 4Å:- Chain A: G.125, G.126, Y.127
Ligand excluded by PLIPEDO.5: 5 residues within 4Å:- Chain A: H.139, F.141, F.210, G.211, T.212
Ligand excluded by PLIPEDO.6: 5 residues within 4Å:- Chain A: N.137, H.139, T.214, P.221, V.222
Ligand excluded by PLIPEDO.7: 6 residues within 4Å:- Chain A: I.95, M.97, C.243, K.244, G.245, D.246
Ligand excluded by PLIPEDO.8: 5 residues within 4Å:- Chain A: V.166, P.169, K.183, A.184, W.197
Ligand excluded by PLIPEDO.9: 1 residues within 4Å:- Chain A: R.80
Ligand excluded by PLIPEDO.10: 4 residues within 4Å:- Chain A: I.24, I.95, R.286, N.287
Ligand excluded by PLIPEDO.11: 8 residues within 4Å:- Chain A: E.205, N.206, R.208, D.235, V.239, G.240, P.241, L.242
Ligand excluded by PLIPEDO.12: 5 residues within 4Å:- Chain A: T.49, F.53, S.54, Q.55, H.268
Ligand excluded by PLIPEDO.15: 7 residues within 4Å:- Chain B: H.117
- Chain C: T.58, V.59, A.60, D.66, V.67, P.68
Ligand excluded by PLIPEDO.16: 2 residues within 4Å:- Chain B: G.126, Y.127
Ligand excluded by PLIPEDO.17: 5 residues within 4Å:- Chain B: N.137, H.139, T.214, P.221, V.222
Ligand excluded by PLIPEDO.18: 5 residues within 4Å:- Chain B: H.139, F.141, F.210, G.211, T.212
Ligand excluded by PLIPEDO.19: 5 residues within 4Å:- Chain B: L.86, N.87, G.245, D.246
- Ligands: EDO.21
Ligand excluded by PLIPEDO.20: 6 residues within 4Å:- Chain B: C.78, A.79, R.80, L.186, D.187, Y.249
Ligand excluded by PLIPEDO.21: 8 residues within 4Å:- Chain B: N.87, L.96, M.97, C.243, K.244, G.245, D.246
- Ligands: EDO.19
Ligand excluded by PLIPEDO.22: 4 residues within 4Å:- Chain B: R.30, T.92, E.94, L.284
Ligand excluded by PLIPEDO.23: 5 residues within 4Å:- Chain B: I.24, I.95, M.97, R.286, N.287
Ligand excluded by PLIPEDO.24: 8 residues within 4Å:- Chain B: E.205, N.206, R.208, D.235, V.239, G.240, P.241, L.242
Ligand excluded by PLIPEDO.25: 5 residues within 4Å:- Chain B: W.157, S.158, T.159, T.160, L.170
Ligand excluded by PLIPEDO.26: 4 residues within 4Å:- Chain B: T.49, F.53, S.54, H.268
Ligand excluded by PLIPEDO.29: 7 residues within 4Å:- Chain C: H.117
- Chain D: T.58, V.59, A.60, D.66, V.67, P.68
Ligand excluded by PLIPEDO.30: 2 residues within 4Å:- Chain C: G.126, Y.127
Ligand excluded by PLIPEDO.31: 4 residues within 4Å:- Chain C: H.139, F.141, F.210, T.212
Ligand excluded by PLIPEDO.32: 6 residues within 4Å:- Chain C: N.137, H.139, T.212, T.214, P.221, V.222
Ligand excluded by PLIPEDO.33: 7 residues within 4Å:- Chain C: M.85, L.86, N.87, M.90, G.245, D.246
- Ligands: EDO.34
Ligand excluded by PLIPEDO.34: 10 residues within 4Å:- Chain C: N.87, M.90, I.95, L.96, M.97, C.243, K.244, G.245, D.246
- Ligands: EDO.33
Ligand excluded by PLIPEDO.35: 6 residues within 4Å:- Chain C: V.166, A.167, P.169, K.183, A.184, W.197
Ligand excluded by PLIPEDO.36: 4 residues within 4Å:- Chain C: R.30, E.94, L.96, L.284
Ligand excluded by PLIPEDO.37: 4 residues within 4Å:- Chain C: I.24, I.95, R.286, N.287
Ligand excluded by PLIPEDO.38: 4 residues within 4Å:- Chain C: T.49, F.53, S.54, H.268
Ligand excluded by PLIPEDO.42: 7 residues within 4Å:- Chain D: H.117
- Chain E: T.58, V.59, A.60, D.66, V.67, P.68
Ligand excluded by PLIPEDO.43: 3 residues within 4Å:- Chain D: G.125, G.126, Y.127
Ligand excluded by PLIPEDO.44: 5 residues within 4Å:- Chain D: H.139, F.141, F.210, G.211, T.212
Ligand excluded by PLIPEDO.45: 6 residues within 4Å:- Chain D: N.137, H.139, T.212, T.214, P.221, V.222
Ligand excluded by PLIPEDO.46: 7 residues within 4Å:- Chain D: M.85, L.86, N.87, M.90, G.245, D.246
- Ligands: EDO.47
Ligand excluded by PLIPEDO.47: 8 residues within 4Å:- Chain D: N.87, L.96, M.97, C.243, K.244, G.245, D.246
- Ligands: EDO.46
Ligand excluded by PLIPEDO.48: 5 residues within 4Å:- Chain D: Y.161, P.162, V.165, V.166, A.167
Ligand excluded by PLIPEDO.49: 5 residues within 4Å:- Chain D: A.167, P.169, K.183, A.184, W.197
Ligand excluded by PLIPEDO.50: 4 residues within 4Å:- Chain D: R.30, T.92, E.94, L.96
Ligand excluded by PLIPEDO.51: 4 residues within 4Å:- Chain D: I.24, I.95, R.286, N.287
Ligand excluded by PLIPEDO.54: 3 residues within 4Å:- Chain E: G.125, G.126, Y.127
Ligand excluded by PLIPEDO.55: 4 residues within 4Å:- Chain E: H.139, F.141, F.210, T.212
Ligand excluded by PLIPEDO.56: 5 residues within 4Å:- Chain E: N.137, H.139, T.212, P.221, V.222
Ligand excluded by PLIPEDO.57: 7 residues within 4Å:- Chain E: M.85, L.86, N.87, M.90, G.245, D.246
- Ligands: EDO.59
Ligand excluded by PLIPEDO.58: 7 residues within 4Å:- Chain E: C.78, A.79, R.80, P.147, L.186, D.187, Y.249
Ligand excluded by PLIPEDO.59: 7 residues within 4Å:- Chain E: N.87, L.96, M.97, K.244, G.245, D.246
- Ligands: EDO.57
Ligand excluded by PLIPEDO.60: 5 residues within 4Å:- Chain E: R.30, E.94, I.95, L.96, L.284
Ligand excluded by PLIPEDO.61: 5 residues within 4Å:- Chain E: T.49, F.53, S.54, Q.55, H.268
Ligand excluded by PLIP- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.13: 2 residues within 4Å:- Chain A: N.44, R.46
Ligand excluded by PLIPCL.27: 2 residues within 4Å:- Chain B: N.44, R.46
Ligand excluded by PLIPCL.28: 2 residues within 4Å:- Chain B: R.30, T.31
Ligand excluded by PLIPCL.39: 2 residues within 4Å:- Chain C: N.44, R.46
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain C: V.29, R.30, T.31
Ligand excluded by PLIPCL.52: 2 residues within 4Å:- Chain D: N.44, R.46
Ligand excluded by PLIPCL.53: 2 residues within 4Å:- Chain D: R.30, T.31
Ligand excluded by PLIPCL.62: 2 residues within 4Å:- Chain E: N.44, R.46
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stroh, L.J. et al., Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family. Mbio (2020)
- Release Date
- 2020-07-08
- Peptides
- Capsid protein VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
BBBC
CCCD
DDDE
EEE
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-pentamer
- Ligands
- 3 x IMD: IMIDAZOLE(Non-covalent)
- 51 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stroh, L.J. et al., Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family. Mbio (2020)
- Release Date
- 2020-07-08
- Peptides
- Capsid protein VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
BBBC
CCCD
DDDE
EEE