SMTL ID : 6y6c.1

TREM2 extracellular domain (19-174) in complex with single-chain variable fragment (scFv-4)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-4-4-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: Q.68, R.69, V.70, N.86 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain C: Q.68, R.69, V.70, N.86 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain E: R.69, V.70, N.86 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.86 Water bridges: E:Q.68, E:Q.68 NAG.4: 3 residues within 4Å: Chain G: R.69, V.70, N.86 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:N.86 Water bridges: G:Q.68, G:Q.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szykowska, A. et al., Selection and structural characterization of anti-TREM2 scFvs that reduce levels of shed ectodomain. Structure (2021)

Release Date

2021-02-17

Peptides

Triggering receptor expressed on myeloid cells 2: ACEG
Single chain variable: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
B

G
B

B
D

D
D

F
C

H
C

Triggering receptor expressed on myeloid cells 2

Single chain variable

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