SMTL ID : 6y6q.1

Structure of Andes virus envelope glycoprotein Gc in postfusion conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-trimer

Ligands

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 10 residues within 4Å: Chain A: Q.208, G.209, G.210, I.211, M.271, N.281 Chain B: E.333, V.340, T.343, V.386 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.211, B:V.340 Hydrogen bonds: B:E.333 NAG-NAG-BMA-MAN.4: 10 residues within 4Å: Chain B: Q.208, G.209, G.210, I.211, M.271, N.281 Chain C: E.333, V.340, T.343, V.386 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:V.340, B:I.211 Hydrogen bonds: C:E.333 NAG-NAG-BMA-MAN.7: 10 residues within 4Å: Chain A: E.333, V.340, T.343, V.386 Chain C: Q.208, G.209, G.210, I.211, M.271, N.281 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:V.340, C:I.211 Hydrogen bonds: A:E.333

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: H.75, K.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.75 Salt bridges: A:K.146 SO4.3: 4 residues within 4Å: Chain A: H.16, K.170, K.361, D.401 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.401 Salt bridges: A:H.16, A:K.170, A:K.361 SO4.5: 2 residues within 4Å: Chain B: H.75, K.146 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.75 Salt bridges: B:K.146 SO4.6: 4 residues within 4Å: Chain B: H.16, K.170, K.361, D.401 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.401 Salt bridges: B:H.16, B:K.170, B:K.361 SO4.8: 2 residues within 4Å: Chain C: H.75, K.146 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.75 Salt bridges: C:K.146 SO4.9: 4 residues within 4Å: Chain C: H.16, K.170, K.361, D.401 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.401 Salt bridges: C:H.16, C:K.170, C:K.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serris, A. et al., The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism. Cell (2020)

Release Date

2020-10-14

Peptides

Envelope polyprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Envelope polyprotein