- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.2: 4 residues within 4Å:- Chain A: H.130, N.241, H.433, H.494
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.130, A:H.433, A:H.494, H2O.17
ZN.11: 4 residues within 4Å:- Chain B: H.130, N.241, H.433, H.494
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.130, B:H.433, B:H.494, H2O.41
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
CUA.3: 7 residues within 4Å:- Chain A: H.583, C.618, W.620, F.621, C.622, H.626, M.629
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:C.618, A:W.620, A:C.622, A:C.622, A:H.626
CUA.12: 6 residues within 4Å:- Chain B: H.583, C.618, W.620, C.622, H.626, M.629
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:C.618, B:C.618, B:W.620, B:C.622, B:C.622
- 7 x FMT: FORMIC ACID(Non-functional Binders)
FMT.4: 4 residues within 4Å:- Chain A: D.161, K.505, T.506, K.507
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.507
FMT.5: 5 residues within 4Å:- Chain A: N.111, E.112, H.115, P.519, T.520
No protein-ligand interaction detected (PLIP)FMT.6: 4 residues within 4Å:- Chain A: Q.183, P.186, K.189, G.248
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.183, A:K.189
FMT.7: 4 residues within 4Å:- Chain A: G.334, K.335, I.352, D.353
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.353
- Water bridges: A:D.353, A:D.353
FMT.9: 4 residues within 4Å:- Chain A: F.123, N.152, T.170
- Chain B: N.589
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:N.152
- Water bridges: A:K.122, A:T.170, B:N.589, B:N.589
FMT.13: 3 residues within 4Å:- Chain B: F.606, V.607
- Ligands: B3P.10
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.607
FMT.14: 3 residues within 4Å:- Chain B: N.111, H.115, T.520
3 PLIP interactions:3 interactions with chain B- Water bridges: B:T.520, B:T.520, B:S.603
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., A [3Cu:2S] cluster provides insight into the assembly and function of the Cu Z site of nitrous oxide reductase. Chem Sci (2021)
- Release Date
- 2021-01-27
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
- 7 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., A [3Cu:2S] cluster provides insight into the assembly and function of the Cu Z site of nitrous oxide reductase. Chem Sci (2021)
- Release Date
- 2021-01-27
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B