SMTL ID : 6y7g.2 (1 other biounit)

Structure of the human RAB3C in complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: S.39, S.40, V.41, G.42, K.43, T.44, S.45, F.55, N.143, K.144, D.146, M.147, S.173, A.174, K.175 Ligands: MG.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.40, A:V.41, A:G.42, A:K.43, A:T.44, A:S.45, A:S.45, A:N.143, A:K.144, A:K.144, A:S.173, A:A.174, A:K.175 Water bridges: A:K.43, A:T.86 Salt bridges: A:K.43, A:D.146 pi-Stacking: A:F.55, A:F.55

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.2: 5 residues within 4Å: Chain A: D.146, M.147, E.148, D.149, E.150 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.146, A:E.148, A:D.149, A:D.149, A:E.150

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: T.44, D.85 Ligands: GDP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.44, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diaz-Saez, L. et al., Structure of the human RAB3C in complex with GDP. To Be Published

Release Date

2021-03-31

Peptides

Ras-related protein Rab-3C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ras-related protein Rab-3C

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