SMTL ID : 6y9u.3 (3 other biounits)

Crystal structure of PnrA from S. pneumoniae in complex with adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 2 residues within 4Å: Chain A: H.6, H.8 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.6, A:H.8 NI.2: 2 residues within 4Å: Chain A: H.7, H.9 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.7, A:H.9

1 x ADN: ADENOSINE(Non-covalent)

ADN.3: 17 residues within 4Å: Chain A: D.27, T.28, G.29, F.36, N.37, G.88, D.111, V.157, I.158, F.161, F.186, V.210, A.211, G.212, V.240, D.241, K.267 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.27, A:T.28, A:G.212, A:D.241, A:K.267, A:K.267 pi-Stacking: A:F.186, A:F.186

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: D.112, V.113, E.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.156 Water bridges: A:N.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abdullah, M.R. et al., Crystal Structure and Pathophysiological Role of the Pneumococcal Nucleoside-binding Protein PnrA. J.Mol.Biol. (2021)

Release Date

2021-02-10

Peptides

Lipoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Lipoprotein

Related Entries With Identical Sequence