SMTL ID : 6ybj.1

Structure of MBP-Mcl-1 in complex with compound 3e

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.66, A:R.67, A:R.67, A:Y.156, A:R.345

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: A.352 Ligand excluded by PLIP

1 x OJW: (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(5-fluoranylfuran-2-yl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-[(2-methylpyrazol-3-yl)methoxy]phenyl]propanoic acid(Non-covalent)

OJW.3: 15 residues within 4Å: Chain A: H.421, A.424, F.425, G.427, M.428, L.443, V.446, M.447, V.450, F.451, G.459, R.460, T.463, L.464, F.467 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.450, A:F.467 Hydrogen bonds: A:R.460 Water bridges: A:H.421 Salt bridges: A:R.460 Halogen bonds: A:A.424

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szlavik, Z. et al., Discovery of S64315, a Potent and Selective Mcl-1 Inhibitor. J.Med.Chem. (2020)

Release Date

2020-11-18

Peptides

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1

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