SMTL ID : 6ybk.1

Structure of MBP-Mcl-1 in complex with compound 4d

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:Y.156, A:R.345 Water bridges: A:D.66, A:R.345

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: V.197, A.352 Ligand excluded by PLIP

1 x OK2: (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(4-fluorophenyl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-(pyrazin-2-ylmethoxy)phenyl]propanoic acid(Non-covalent)

OK2.3: 16 residues within 4Å: Chain A: H.421, A.424, F.425, M.428, L.432, L.443, V.446, M.447, V.450, F.451, N.457, G.459, R.460, T.463, L.464, F.467 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.421, A:F.425, A:L.443, A:V.446, A:M.447, A:V.450, A:V.450, A:F.467, A:F.467, A:F.467 Hydrogen bonds: A:R.460 Salt bridges: A:R.460 Halogen bonds: A:A.424

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szlavik, Z. et al., Discovery of S64315, a Potent and Selective Mcl-1 Inhibitor. J.Med.Chem. (2020)

Release Date

2020-11-18

Peptides

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1

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