SMTL ID : 6yck.1

Crystal structure of GcoA T296A bound to p-vanillin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 29 residues within 4Å: Chain A: I.82, I.83, H.90, R.94, L.101, L.146, Y.244, A.248, E.251, P.252, L.288, P.293, I.294, A.298, R.300, Y.323, A.350, F.351, G.352, A.353, H.356, A.357, C.358, A.359, G.360, F.363, A.364, M.368 Ligands: V55.2 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:I.82, A:I.83, A:L.101, A:L.146, A:Y.244, A:Y.244, A:A.248, A:E.251, A:P.252, A:L.288, A:P.293, A:I.294, A:Y.323, A:F.351, A:F.351, A:A.359 Hydrogen bonds: A:Y.323, A:A.353 Salt bridges: A:H.90, A:R.94, A:R.300, A:H.356 Metal complexes: A:C.358

1 x V55: 4-hydroxy-3-methoxybenzaldehyde(Non-covalent)

V55.2: 12 residues within 4Å: Chain A: F.77, I.83, F.171, V.243, L.246, G.247, A.248, I.294, A.297, A.298, F.397 Ligands: HEM.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.77, A:I.83, A:F.171, A:F.171, A:I.294, A:F.397 Hydrogen bonds: A:V.243, A:G.247, A:A.248

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 7 residues within 4Å: Chain A: E.105, W.109, L.113, D.148, L.149, Q.153, D.215 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.153, A:D.215, A:D.215 Water bridges: A:A.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ellis, E.S. et al., Engineering a Cytochrome P450 for Demethylation of Lignin-Derived Aromatic Aldehydes. Jacs Au (2021)

Release Date

2021-02-17

Peptides

Aromatic O-demethylase, cytochrome P450 subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aromatic O-demethylase, cytochrome P450 subunit

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