SMTL ID : 6yd6.1

SaFtsZ-UCM152 (comp.20)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain A: G.12, G.13, G.14, N.17, R.21, G.96, M.97, G.99, G.100, T.101, G.102, T.125, P.127, E.131, R.135, N.158, F.175 Ligands: MB3.4, EDO.5 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.13, A:G.14, A:N.17, A:R.21, A:R.21, A:G.100, A:T.101, A:T.101, A:T.101, A:G.102, A:T.125, A:E.131, A:R.135, A:R.135, A:N.158, A:N.158 Water bridges: A:G.15, A:N.36, A:M.97, A:G.99, A:T.103, A:E.131 pi-Stacking: A:F.175 pi-Cation interactions: A:F.175

1 x OMW: 2,6-bis(fluoranyl)-3-[[3-(trifluoromethyl)phenyl]methoxy]benzamide(Non-covalent)

OMW.2: 22 residues within 4Å: Chain A: Q.184, G.185, G.188, I.189, D.191, L.192, V.195, G.197, V.199, N.200, L.201, M.218, G.219, L.253, N.255, G.287, T.288, V.289, T.301, V.302, I.303 Ligands: K.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.192, A:L.253, A:T.301, A:I.303 Hydrogen bonds: A:G.197, A:L.201, A:N.255, A:T.288 Halogen bonds: A:G.185, A:V.302

1 x K: POTASSIUM ION(Non-covalent)

K.3: 5 residues within 4Å: Chain A: L.192, V.195, N.200, L.201 Ligands: OMW.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:L.192, A:V.195, A:L.201, OMW.2

1 x MB3: 1-methylpyrrolidin-2-one(Non-covalent)

MB3.4: 11 residues within 4Å: Chain A: G.14, G.15, A.18, T.94, S.95, G.96, V.123, T.125, A.178, D.179 Ligands: GDP.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.125 Hydrogen bonds: A:D.179 Water bridges: A:R.21

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: G.13, G.14, N.17, A.41 Ligands: GDP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.17 Water bridges: A:G.13, A:G.13, A:N.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huecas, S. et al., Targeting the FtsZ Allosteric Binding Site with a Novel Fluorescence Polarization Screen, Cytological and Structural Approaches for Antibacterial Discovery. J.Med.Chem. (2021)

Release Date

2021-07-28

Peptides

Cell division protein FtsZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division protein FtsZ

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