SMTL ID : 6ydj.1

P146A variant of beta-phosphoglucomutase from Lactococcus lactis in complex with glucose 6-phosphate and trifluoromagnesate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.04 Å

Oligo State

monomer

Ligands

1 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)

BG6.1: 18 residues within 4Å: Chain A: D.10, H.20, W.24, L.44, K.45, G.46, V.47, S.48, R.49, S.52, K.76, S.114, A.115, S.116, K.117, N.118 Ligands: MGF.2, MG.3 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:D.10, A:D.10, A:W.24, A:L.44, A:G.46, A:S.52, A:A.115, A:S.116, A:K.117, A:N.118, A:N.118 Water bridges: A:H.20, A:H.20, A:R.49, A:K.76, A:K.76, A:A.115, A:S.171 Salt bridges: A:H.20, A:H.20, A:R.49, A:K.76

1 x MGF: TRIFLUOROMAGNESATE(Non-covalent)

MGF.2: 8 residues within 4Å: Chain A: D.8, L.9, D.10, S.114, A.115, K.145 Ligands: BG6.1, MG.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.8

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: D.8, D.10, D.170 Ligands: BG6.1, MGF.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:D.10, A:D.170, H2O.2, H2O.5

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: R.49, N.77, V.81, K.117, N.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.49, A:R.49, A:N.77, A:N.118

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.6: 6 residues within 4Å: Chain A: A.17, E.18, F.21, R.38, N.41, K.45 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.21 Hydrogen bonds: A:R.38, A:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wood, H.P. et al., Allomorphy as a mechanism of post-translational control of enzyme activity. Nat Commun (2020)

Release Date

2020-10-28

Peptides

Beta-phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-phosphoglucomutase

Related Entries With Identical Sequence