SMTL ID : 6yf2.1

FKBP12 in complex with the BMP potentiator compound 6 at 1.03A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.03 Å

Oligo State

monomer

Ligands

1 x OP5: (1~{R},9~{S},12~{S},13~{R},14~{S},17~{R},18~{E},21~{S},23~{S},24~{R},25~{S},27~{R})-23,25-dimethoxy-12-[(~{E})-1-[(1~{R},3~{R},4~{R})-3-methoxy-4-oxidanyl-cyclohexyl]prop-1-en-2-yl]-13,19,21,27-tetramethyl-1,14-bis(oxidanyl)-17-(2-oxidanylidenepropyl)-11,28-dioxa-4-azatricyclo[22.3.1.0^{4,9}]octacos-18-ene-2,3,10,16-tetrone(Non-covalent)

OP5.1: 14 residues within 4Å: Chain A: Y.28, F.38, D.39, R.44, F.48, E.56, V.57, I.58, W.61, A.83, Y.84, H.89, I.93, F.101 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.28, A:F.48, A:F.48, A:F.48, A:I.58, A:W.61, A:W.61, A:Y.84, A:I.93 Hydrogen bonds: A:D.39, A:E.56, A:I.58, A:Y.84

1 x CD: CADMIUM ION(Non-covalent)

CD.2: 3 residues within 4Å: Chain A: E.56 Ligands: CL.3, CL.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.56, A:E.56, H2O.2, H2O.5

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: M.51, K.54, E.56 Ligands: CD.2, CL.4 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: K.49, F.50, M.51, E.56 Ligands: CD.2, CL.3 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain A: E.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larraufie, M.H. et al., Phenotypic screen identifies calcineurin-sparing FK506 analogs as BMP potentiators for treatment of acute kidney injury. Cell Chem Biol (2021)

Release Date

2021-03-10

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase FKBP1A

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