SMTL ID : 6yg6.2 (1 other biounit)

Crystal structure of MKK7 (MAP2K7) covalently bound with type-II inhibitor TL10-105

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: E.118, S.252, R.284, Y.285 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.118, A:S.252, A:R.284, A:R.284, A:Y.285 EDO.2: 2 residues within 4Å: Chain A: M.249, G.250 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.250 EDO.3: 4 residues within 4Å: Chain A: R.111, V.299, M.300, K.302 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.111, A:K.302, A:K.302

1 x OQ8: ~{N}-[4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-4-methyl-3-[2-[[(3~{S})-1-propanoylpyrrolidin-3-yl]amino]pyrimidin-4-yl]oxy-benzamide(Covalent)

OQ8.4: 26 residues within 4Å: Chain A: M.28, V.36, A.49, K.51, D.68, V.72, I.81, V.82, M.98, E.99, L.100, M.101, G.102, C.104, K.107, L.135, V.141, I.142, H.143, R.144, S.149, L.152, L.161, C.162, D.163, F.164 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.36, A:D.68, A:V.72, A:R.144, A:L.152, A:D.163, A:D.163, A:F.164 Hydrogen bonds: A:M.101, A:M.101, A:D.163 Water bridges: A:K.51 Salt bridges: A:D.68, A:D.68 pi-Cation interactions: A:K.51 Halogen bonds: A:L.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schroder, M. et al., Catalytic Domain Plasticity of MKK7 Reveals Structural Mechanisms of Allosteric Activation and Diverse Targeting Opportunities. Cell Chem Biol (2020)

Release Date

2020-08-12

Peptides

Dual specificity mitogen-activated protein kinase kinase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dual specificity mitogen-activated protein kinase kinase 7

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