SMTL ID : 6ygk.1

TGT Y330F mutant crystallised at pH 8.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: P.58, E.59, R.62, G.96, W.97, D.98, R.99 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.58, A:G.96, A:D.98, A:R.99 Water bridges: A:E.59, A:R.99 GOL.2: 4 residues within 4Å: Chain A: Q.119, S.120, E.121, R.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.121, A:R.176, A:R.176 GOL.3: 7 residues within 4Å: Chain A: W.298, E.319, K.362, F.375, D.378, F.379, R.382 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.319, A:K.362, A:D.378, A:R.382 Water bridges: A:E.319 GOL.4: 7 residues within 4Å: Chain A: L.313, P.315, C.325, Q.326, K.327, W.328, S.329 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.325 GOL.6: 7 residues within 4Å: Chain B: P.58, E.59, R.62, G.96, W.97, D.98, R.99 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:P.58, B:G.96, B:D.98, B:R.99 Water bridges: B:E.59, B:R.99 GOL.7: 4 residues within 4Å: Chain B: Q.119, S.120, E.121, R.176 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.121, B:R.176, B:R.176 GOL.8: 7 residues within 4Å: Chain B: W.298, E.319, K.362, F.375, D.378, F.379, R.382 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.319, B:K.362, B:D.378, B:R.382 GOL.9: 7 residues within 4Å: Chain B: L.313, P.315, C.325, Q.326, K.327, W.328, S.329 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:C.325

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: C.320, C.322, V.324, C.325, H.351 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.320, A:C.322, A:C.325, A:H.351 ZN.10: 5 residues within 4Å: Chain B: C.320, C.322, V.324, C.325, H.351 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.320, B:C.322, B:C.325, B:H.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, A. et al., Mutation study on tRNA-guanine transglycosylase for catalysis Testing. To Be Published

Release Date

2020-04-08

Peptides

Queuine tRNA-ribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Queuine tRNA-ribosyltransferase

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