SMTL ID : 6ygl.1

TGT W326F mutant labelled mit 5F-Trp crystallised at pH 5.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: P.58, E.59, R.62, G.96, W.97, D.98, R.99 Chain B: K.327 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:P.58, A:D.98, A:D.98, A:R.99, B:K.327 Water bridges: A:R.99 GOL.2: 6 residues within 4Å: Chain A: W.298, E.319, K.362, F.375, F.379, R.382 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.319, A:K.362, A:D.378, A:R.382 Water bridges: A:E.319 GOL.5: 8 residues within 4Å: Chain A: K.327 Chain B: P.58, E.59, R.62, G.96, W.97, D.98, R.99 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.58, B:D.98, B:D.98, B:R.99, A:K.327 Water bridges: B:R.99 GOL.6: 6 residues within 4Å: Chain B: W.298, E.319, K.362, F.375, F.379, R.382 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.319, B:K.362, B:D.378, B:R.382

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: C.320, C.322, V.324, C.325, H.351 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.320, A:C.322, A:C.325, A:H.351 ZN.7: 5 residues within 4Å: Chain B: C.320, C.322, V.324, C.325, H.351 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.320, B:C.322, B:C.325, B:H.351

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: K.54, V.284, T.287, R.288, R.291 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain B: K.54, V.284, T.287, R.288, R.291 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, A. et al., Mutation study on tRNA-guanine transglycosylase within 19F NMR experiments for conformational change analysis. To Be Published

Release Date

2020-04-08

Peptides

Queuine tRNA-ribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Queuine tRNA-ribosyltransferase