SMTL ID : 6yhr.1

Crystal structure of Werner syndrome helicase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: H.31, S.33, F.34, K.35, Q.38, T.58, G.59, G.61, K.62, S.63, R.339, R.342 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.33, A:K.35, A:Q.38, A:G.59, A:K.62, A:S.63, A:R.339, A:R.342 Water bridges: A:H.31, A:S.33, A:S.63, A:L.64, A:N.314 Salt bridges: A:R.342 pi-Stacking: A:H.31, A:H.31

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.393, C.420, C.421, C.424 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.393, A:C.420, A:C.421, A:C.424 ZN.3: 2 residues within 4Å: Chain A: H.43, E.48 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.43, A:E.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newman, J.A. et al., Structure of the helicase core of Werner helicase, a key target in microsatellite instability cancers. Life Sci Alliance (2021)

Release Date

2020-04-29

Peptides

Werner syndrome ATP-dependent helicase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Werner syndrome ATP-dependent helicase