SMTL ID : 6yhw.1 (1 other biounit)

Co-crystals in the P212121 space group, of a beta-cyclodextrin spacered by triazole heptyl from alpha-D-mannose, with FimH lectin at 2.00 A resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC- GLC- GLC- GLC: Cycloheptakis-(1-4)-(alpha-D-glucopyranose)(Non-functional Binders)

GLC-GLC-GLC-GLC-GLC-GLC-GLC.1: 2 residues within 4Å: Chain A: T.72 Ligands: TA5.2 No protein-ligand interaction detected (PLIP)

1 x TA5: 2H-1,2,3-TRIAZOL-4-YLMETHANOL(Non-covalent)

TA5.2: 6 residues within 4Å: Chain A: Y.69, T.72, Y.158 Ligands: GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, HP6.3 No protein-ligand interaction detected (PLIP)

1 x HP6: HEPTANE(Non-covalent)

HP6.3: 6 residues within 4Å: Chain A: I.34, Y.69, I.73, Y.158 Ligands: TA5.2, MAN.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.69, A:Y.69

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.4: 14 residues within 4Å: Chain A: F.22, I.34, G.35, N.67, D.68, Y.69, I.73, D.75, Q.154, N.156, N.159, D.161, F.163 Ligands: HP6.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:F.22, A:D.68, A:Y.69, A:D.75, A:D.75, A:Q.154, A:N.156, A:D.161 Water bridges: A:F.22, A:G.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alvarez Dorta, D. et al., The Antiadhesive Strategy in Crohn's Disease: Orally Active Mannosides to Decolonize Pathogenic Escherichia coli from the Gut. Chembiochem (2016)

Release Date

2020-05-06

Peptides

FimH: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FimH

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