SMTL ID : 6yjd.1

Lamin A coil2 dimer stabilized by N-terminal capping

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

4 x NI: NICKEL (II) ION(Non-covalent)(Non-functional Binders)

NI.1: 6 residues within 4Å: Chain A: H.9, L.33, Y.37 Chain B: H.9, Y.37 Ligands: NI.6 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.9 NI.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NI.6: 6 residues within 4Å: Chain A: H.9, Y.37 Chain B: H.9, L.33, Y.37 Ligands: NI.1 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.9 NI.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: Q.84 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: Q.84 Ligand excluded by PLIP

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 2 residues within 4Å: Chain A: E.28, Q.31 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.28, A:E.28, A:Q.31 TRS.5: 2 residues within 4Å: Chain B: E.85, I.89 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.85 TRS.9: 2 residues within 4Å: Chain B: E.28, Q.31 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.28, B:Q.31 TRS.10: 2 residues within 4Å: Chain A: E.85, I.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.85, A:E.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stalmans, G. et al., Addressing the Molecular Mechanism of Longitudinal Lamin Assembly Using Chimeric Fusions. Cells (2020)

Release Date

2021-02-24

Peptides

Capsid assembly scaffolding protein,Prelamin-A/C: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Capsid assembly scaffolding protein,Prelamin-A/C