SMTL ID : 6yjm.1 (1 other biounit)

Crystal Structure of the Catalytic Domain of ADAMTS-5 in Complex with the Inhibitor GLPG1972

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.149, H.153, H.159 Ligands: OU5.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.149, A:H.153, A:H.159

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.9, D.92, D.99, C.210, D.213 Ligands: CA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.9, A:D.92, A:D.99, A:C.210, H2O.1 CA.3: 4 residues within 4Å: Chain A: E.9, D.92, D.213 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.9, A:D.92, A:D.92, A:D.213, H2O.1 CA.4: 5 residues within 4Å: Chain A: D.108, L.109, C.115, T.117, E.137 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.108, A:L.109, A:C.115, A:T.117, A:E.137, H2O.2

1 x OU5: (5~{S})-5-[3-[(3~{S})-4-[3,5-bis(fluoranyl)phenyl]-3-methyl-piperazin-1-yl]-3-oxidanylidene-propyl]-5-cyclopropyl-imidazolidine-2,4-dione(Non-covalent)

OU5.5: 20 residues within 4Å: Chain A: T.117, L.118, G.119, M.120, H.142, F.145, T.146, H.149, E.150, H.153, H.159, R.176, L.177, S.179, S.180, I.181, L.182, T.183, I.185 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.117, A:L.182 Hydrogen bonds: A:L.118, A:G.119, A:G.119 Halogen bonds: A:R.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brebion, F. et al., Discovery of GLPG1972/S201086, a Potent, Selective, and Orally Bioavailable ADAMTS-5 Inhibitor for the Treatment of Osteoarthritis. J.Med.Chem. (2021)

Release Date

2021-04-14

Peptides

A disintegrin and metalloproteinase with thrombospondin motifs 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A disintegrin and metalloproteinase with thrombospondin motifs 5

Related Entries With Identical Sequence