SMTL ID : 6yjz.2 (1 other biounit)

Crystal structure of mouse pyridoxal kinase in apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: E.6, C.7, L.33, G.34, F.35, H.248, K.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.6, A:E.6, A:H.248, A:K.249 GOL.8: 6 residues within 4Å: Chain B: E.6, C.7, L.33, G.34, F.35, H.248 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.6, B:C.7, B:G.34

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: K.121 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: E.157, L.158, G.161, R.162, K.163 No protein-ligand interaction detected (PLIP) EDO.4: 10 residues within 4Å: Chain A: S.14, V.16, V.21, V.43, F.45, N.47, H.48, T.49, Y.86, V.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.14, A:T.49 EDO.5: 9 residues within 4Å: Chain A: S.42, V.43, V.58, L.59, Y.86, T.87, R.88, D.89, F.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.42, A:Y.86, A:R.88 EDO.6: 8 residues within 4Å: Chain A: H.65, Y.68, E.69, K.72, M.95, D.98, I.99, E.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.102 EDO.7: 5 residues within 4Å: Chain A: Q.167, E.168, F.171, R.220, L.314 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: R.18 Chain B: R.8, K.78, Y.79, D.80 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.8, B:D.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kasaragod, V.B. et al., Pyridoxal kinase inhibition by artemisinins down-regulates inhibitory neurotransmission. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2021-04-14

Peptides

Pyridoxal Kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Pyridoxal Kinase

Related Entries With Identical Sequence