SMTL ID : 6yl4.1

Soluble epoxide hydrolase in complex with 3-((R)-3-(1-hydroxyureido)but-1-yn-1-yl)-N-((S)-3-phenyl-3-(4-trifluoromethoxy)phenyl)propyl)benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x OWW: 3-[(3~{R})-3-[aminocarbonyl(oxidanyl)amino]but-1-ynyl]-~{N}-[(3~{S})-3-phenyl-3-[4-(trifluoromethyloxy)phenyl]propyl]benzamide(Non-covalent)

OWW.1: 18 residues within 4Å: Chain A: F.49, D.117, W.118, M.121, I.157, Y.165, Q.166, F.169, L.190, M.201, L.210, Y.248, M.251, D.278, F.279, V.280, H.306, W.307 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.49, A:W.118, A:Y.165, A:Y.165, A:F.169, A:L.190, A:L.210, A:Y.248, A:V.280, A:H.306, A:W.307 Hydrogen bonds: A:D.117, A:Y.165, A:Q.166 Water bridges: A:H.306 pi-Stacking: A:W.118 Halogen bonds: A:D.278 OWW.2: 18 residues within 4Å: Chain B: F.49, D.117, W.118, M.121, I.157, Y.165, Q.166, F.169, L.190, M.201, L.210, Y.248, M.251, D.278, F.279, V.280, H.306, W.307 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:F.49, B:W.118, B:Y.165, B:Y.165, B:F.169, B:L.190, B:L.210, B:Y.248, B:V.280, B:H.306, B:W.307 Hydrogen bonds: B:D.117, B:Y.165, B:Q.166 Water bridges: B:H.306 pi-Stacking: B:W.118 Halogen bonds: B:D.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hiesinger, K. et al., Design, Synthesis, and Structure-Activity Relationship Studies of Dual Inhibitors of Soluble Epoxide Hydrolase and 5-Lipoxygenase. J.Med.Chem. (2020)

Release Date

2020-10-21

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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