- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 3 residues within 4Å:- Chain A: P.62, L.435, Y.436
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.436
EDO.3: 2 residues within 4Å:- Chain A: P.153, H.165
No protein-ligand interaction detected (PLIP)EDO.8: 4 residues within 4Å:- Chain B: Q.41, K.42, Q.45, N.440
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.440
- Water bridges: B:G.38, B:Q.41, B:Q.45
EDO.9: 4 residues within 4Å:- Chain B: R.188, K.190, V.215, G.216
1 PLIP interactions:1 interactions with chain B- Water bridges: B:V.215
EDO.10: 6 residues within 4Å:- Chain B: L.106, F.107, V.230, A.231, G.233, N.237
1 PLIP interactions:1 interactions with chain B- Water bridges: B:F.107
- 2 x MLI: MALONATE ION(Non-functional Binders)
MLI.4: 10 residues within 4Å:- Chain A: Y.76, E.78, Y.86
- Chain B: S.56, H.147, S.197, H.225, K.251, R.383
- Ligands: PMP.7
12 PLIP interactions:10 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.56, B:S.197, A:Y.86, A:Y.86
- Water bridges: B:S.197, B:S.197, B:R.383
- Salt bridges: B:H.147, B:H.225, B:K.251, B:K.251, B:R.383
MLI.6: 10 residues within 4Å:- Chain A: S.56, H.147, S.197, H.225, K.251, R.383
- Chain B: Y.76, E.78, Y.86
- Ligands: PMP.1
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.56, A:S.197, B:Y.86
- Water bridges: A:S.197, A:S.197
- Salt bridges: A:H.147, A:H.225, A:K.251, A:K.251, A:R.383
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nogues, I. et al., Structural and kinetic properties of serine hydroxymethyltransferase from the halophytic cyanobacterium Aphanothece halophytica provide a rationale for salt tolerance. Int.J.Biol.Macromol. (2020)
- Release Date
- 2020-06-03
- Peptides
- Serine hydroxymethyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x MLI: MALONATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nogues, I. et al., Structural and kinetic properties of serine hydroxymethyltransferase from the halophytic cyanobacterium Aphanothece halophytica provide a rationale for salt tolerance. Int.J.Biol.Macromol. (2020)
- Release Date
- 2020-06-03
- Peptides
- Serine hydroxymethyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B