SMTL ID : 6yn2.1 (1 other biounit)

Crystal structure of Renilla reniformis luciferase variant RLuc8-W121F/E144Q in complex with a coelenteramide (the postcatalytic enzyme-product complex)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CEI: N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE(Non-covalent)

CEI.1: 18 residues within 4Å: Chain A: D.120, F.121, Q.144, S.145, V.146, V.147, D.148, I.150, W.156, I.159, D.162, I.223, P.224, F.261, F.262, I.266, H.285 Ligands: ACT.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.121, A:V.146, A:V.146, A:I.150, A:I.150, A:I.223, A:P.224, A:F.262, A:I.266 Hydrogen bonds: A:S.145, A:V.147, A:D.148 pi-Stacking: A:W.156, A:F.261 pi-Cation interactions: A:H.285

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: N.53, D.120, F.181, V.185, H.285, F.286 Ligands: CEI.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.181, A:V.185, A:F.286 Water bridges: A:N.53 Salt bridges: A:H.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schenkmayerova, A. et al., Engineering the protein dynamics of an ancestral luciferase. Nat Commun (2021)

Release Date

2021-04-21

Peptides

Coelenterazine h 2-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coelenterazine h 2-monooxygenase

Related Entries With Identical Sequence