SMTL ID : 6ynf.2 (1 other biounit)

GAPDH purified from the supernatant of HEK293F cells: crystal form 3 of 4.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-tetramer

Ligands

5 x XPE: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL(Non-covalent)

XPE.1: 9 residues within 4Å: Chain A: D.126, A.127, P.128, M.129, F.130, N.135, K.138, L.143, K.218 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.129 XPE.2: 10 residues within 4Å: Chain B: D.126, A.127, P.128, M.129, F.130, N.135, K.138, L.143, K.218, V.219 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:M.129 XPE.3: 10 residues within 4Å: Chain C: D.126, A.127, P.128, M.129, F.130, N.135, K.138, L.143, K.218, V.219 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:M.129 XPE.4: 7 residues within 4Å: Chain C: H.164, D.165, N.166, F.167, G.168, E.249, K.250 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.250 XPE.5: 12 residues within 4Å: Chain D: D.126, A.127, P.128, M.129, F.130, N.135, K.138, Y.139, D.140, L.143, K.218, V.219 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:M.129 Water bridges: D:N.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lia, A. et al., Partial catalytic Cys oxidation of human GAPDH to Cys-sulfonic acid. Wellcome Open Res (2020)

Release Date

2020-05-06

Peptides

Glyceraldehyde-3-phosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
F

D
G

Glyceraldehyde-3-phosphate dehydrogenase

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