SMTL ID : 6yoh.1 (1 other biounit)

LecA from Pseudomonas aeruginosa in complex with a catechol CAS no. 61445-50-9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: Y.36, D.100, T.104, N.107, N.108 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:Y.36, A:D.100, A:T.104 CA.3: 5 residues within 4Å: Chain B: Y.36, D.100, T.104, N.107, N.108 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:Y.36, B:D.100, B:T.104

2 x P4H: [2,4-bis(oxidanyl)phenyl]-[3,4-bis(oxidanyl)phenyl]methanone(Non-covalent)

P4H.2: 9 residues within 4Å: Chain A: D.59, S.72, G.73, T.74, I.75, P.76, P.87, N.89, V.90 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.75, A:V.90 Hydrogen bonds: A:D.59, A:D.59, A:G.73, A:N.89 P4H.4: 7 residues within 4Å: Chain B: D.59, T.74, I.75, P.76, L.81, W.84, P.87 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:P.76, B:L.81 Hydrogen bonds: B:D.59, B:D.59 Water bridges: B:P.76, B:G.80 pi-Stacking: B:W.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhaudomlarp, S. et al., Non-Carbohydrate Glycomimetics as Inhibitors of Calcium(II)-binding Lectins. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2021-02-24

Peptides

PA-I galactophilic lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

PA-I galactophilic lectin

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