SMTL ID : 6yp1.1

HiCel7B unliganded

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 13 residues within 4Å: Chain A: N.143, A.145, Y.147, Y.171, D.173, Q.175, F.177, E.197, D.199, E.202, S.345, W.347 Ligands: GOL.11 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.143, A:D.173, A:D.199, A:E.202, A:W.347 Water bridges: A:Q.175 GOL.5: 6 residues within 4Å: Chain A: V.66, S.158, K.159, Y.160, N.161, L.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.158, A:Y.160 GOL.11: 7 residues within 4Å: Chain A: R.108, Y.147, Y.171, F.177, S.345, W.347 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.108, A:S.345 GOL.12: 2 residues within 4Å: Chain A: Q.12, G.90 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.12, A:Q.12, A:G.90 GOL.14: 4 residues within 4Å: Chain A: A.27, T.28, K.114 Ligands: SO4.15 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.28, A:T.28, A:T.28 Water bridges: A:R.17, A:T.28

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.118, M.121, H.123, P.153, R.338, G.339 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.123 Salt bridges: A:R.118, A:H.123 SO4.3: 1 residues within 4Å: Ligands: NAG.7 No protein-ligand interaction detected (PLIP) SO4.4: 3 residues within 4Å: Chain A: H.359, A.366, K.367 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.367 Water bridges: A:H.359 Salt bridges: A:H.359 SO4.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.9: 2 residues within 4Å: Chain A: R.254, L.263 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.254 SO4.10: 5 residues within 4Å: Chain A: A.43, E.44, G.45, L.46, G.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.44, A:G.45, A:L.46, A:G.47 SO4.13: 3 residues within 4Å: Chain A: K.116, R.117, Y.166 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.8, A:H.10 Salt bridges: A:K.116, A:R.117 SO4.15: 2 residues within 4Å: Chain A: K.114 Ligands: GOL.14 No protein-ligand interaction detected (PLIP) SO4.16: 2 residues within 4Å: Chain A: R.94, Q.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.96 Water bridges: A:R.94, A:Q.96 Salt bridges: A:R.94

1 x ACM: ACETAMIDE(Non-covalent)

ACM.6: 6 residues within 4Å: Chain A: N.89, G.90, T.91, S.92, T.387 Ligands: NAG.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.91, A:T.91

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 4 residues within 4Å: Chain A: N.247, N.300, K.301 Ligands: SO4.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.300, A:K.301 Water bridges: A:N.247, A:N.247, A:N.300 NAG.17: 2 residues within 4Å: Chain A: N.89 Ligands: ACM.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Boer, C. et al., Glycosylated cyclophellitol-derived activity-based probes and inhibitors for cellulases. Rsc Chem Biol (2020)

Release Date

2020-09-16

Peptides

Endoglucanase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Endoglucanase 1