SMTL ID : 6ypa.1 (1 other biounit)

The C146A variant of an amidase from Pyrococcus horikoshii with bound glutaramide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-dimer

Ligands

2 x P6W: pentanediamide(Non-covalent)

P6W.1: 12 residues within 4Å: Chain A: E.62, Y.68, K.133, F.137, E.140, A.166, F.167, W.169, N.191, L.192, V.193, M.194 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.137, A:F.137 Hydrogen bonds: A:E.62, A:Y.68, A:K.133, A:F.167, A:W.169, A:N.191, A:V.193, A:M.194 Water bridges: A:Y.196 P6W.3: 12 residues within 4Å: Chain B: E.62, Y.68, K.133, F.137, E.140, A.166, F.167, W.169, N.191, L.192, V.193, M.194 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.137, B:F.137, B:F.167 Hydrogen bonds: B:E.62, B:K.133, B:F.167, B:W.169, B:N.191, B:V.193, B:M.194

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: P.198, R.199, P.202, K.229, V.239, I.242 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.229, A:K.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sewell, B.T. et al., The structure of the C146A variant of the amidase from Pyrococcus horikoshii bound to glutaramide suggests the basis of amide recognition. To Be Published

Release Date

2020-06-03

Peptides

CN hydrolase domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CN hydrolase domain-containing protein

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