SMTL ID : 6ype.2 (1 other biounit)

Crystal structure of the human neuronal pentraxin 1 (NP1) pentraxin (PTX) domain.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.56, E.134, Q.135, D.136 Ligands: CA.2, CAC.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.134, A:E.134, A:Q.135, A:D.136, H2O.6 CA.2: 5 residues within 4Å: Chain A: E.134, D.136, Q.146 Ligands: CA.1, CAC.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.134, A:D.136, A:D.136, H2O.2, H2O.2

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.3: 6 residues within 4Å: Chain A: N.56, E.134, D.136, Q.146 Ligands: CA.1, CA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.56, A:Q.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, K. et al., A synthetic synaptic organizer protein restores glutamatergic neuronal circuits. Science (2020)

Release Date

2020-06-03

Peptides

Neuronal pentraxin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Neuronal pentraxin-1

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