SMTL ID : 6ypf.1

NUDIX1 hydrolase from Rosa x hybrida in complex with geranyl pyrophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x GPP: GERANYL DIPHOSPHATE(Non-covalent)

GPP.1: 18 residues within 4Å: Chain A: A.18, V.20, R.34, L.38, S.44, L.45, S.47, G.48, H.49, T.81, N.83, F.85, Y.94, A.96, F.98, F.134, P.136, L.137 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.20, A:V.20, A:F.85, A:Y.94, A:Y.94, A:F.98, A:F.134, A:P.136 Salt bridges: A:R.34, A:R.34, A:H.49, A:H.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, P. et al., Functional diversification in the Nudix hydrolase gene family drives sesquiterpene biosynthesis in Rosa × wichurana. Plant J. (2020)

Release Date

2020-07-22

Peptides

Geranyl diphosphate phosphohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Geranyl diphosphate phosphohydrolase

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