SMTL ID : 6ypi.1

Structure of the engineered metallo-Diels-Alderase DA7 W16G,K58Q,L77R,T78R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.37, H.63, H.67 Ligands: BEZ.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.37, A:H.63, A:H.67

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: Q.33, G.66, H.67, Q.82 Ligands: BEZ.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.82

1 x DMX: 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE(Non-covalent)

DMX.3: 4 residues within 4Å: Chain A: E.77, R.80, I.81, N.84 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.81, A:N.84

1 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.4: 10 residues within 4Å: Chain A: Q.33, L.36, C.37, M.40, H.63, H.67, L.85, Y.86 Ligands: ZN.1, PEG.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.33, A:L.36, A:L.85, A:Y.86 Salt bridges: A:H.63, A:H.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basler, S. et al., Efficient Lewis acid catalysis of an abiological reaction in a de novo protein scaffold. Nat.Chem. (2021)

Release Date

2021-04-28

Peptides

DA7 W16G,K58Q,L77R,T78R: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DA7 W16G,K58Q,L77R,T78R