- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x F6R: FRUCTOSE -6-PHOSPHATE(Covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 11 residues within 4Å:- Chain A: D.137, M.144, N.170, I.172, H.173, R.176
- Chain J: N.170, I.172, H.173, R.176
- Ligands: GOL.29
4 PLIP interactions:2 interactions with chain J, 2 interactions with chain A- Hydrogen bonds: J:N.170, J:R.176, A:N.170, A:R.176
GOL.4: 11 residues within 4Å:- Chain B: N.170, I.172, H.173, R.176
- Chain I: D.137, M.144, N.170, I.172, H.173, R.176
- Ligands: GOL.27
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain I- Hydrogen bonds: B:N.170, B:R.176, I:N.170, I:R.176
GOL.7: 6 residues within 4Å:- Chain B: M.149
- Chain C: L.175, R.176, V.179
- Chain H: D.142, Q.145
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain H- Hydrogen bonds: C:R.176, H:Q.145
GOL.8: 10 residues within 4Å:- Chain C: N.170, I.172, H.173, R.176
- Chain H: D.137, N.170, I.172, H.173, R.176
- Ligands: GOL.24
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain H- Hydrogen bonds: C:N.170, C:R.176, H:N.170, H:R.176
GOL.11: 11 residues within 4Å:- Chain D: M.144, N.170, I.172, H.173, R.176
- Chain G: D.137, N.170, I.172, H.173, R.176
- Ligands: GOL.20
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain G- Hydrogen bonds: D:N.170, D:R.176, G:N.170, G:H.173, G:R.176
GOL.13: 10 residues within 4Å:- Chain E: D.137, N.170, I.172, H.173, R.176
- Chain F: N.170, I.172, H.173, R.176
- Ligands: GOL.18
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: E:N.170, E:R.176, F:N.170, F:R.176
GOL.18: 11 residues within 4Å:- Chain E: N.170, I.172, H.173, R.176
- Chain F: D.137, M.144, N.170, I.172, H.173, R.176
- Ligands: GOL.13
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:N.170, F:R.176, E:N.170, E:R.176
GOL.20: 11 residues within 4Å:- Chain D: D.137, M.144, N.170, I.172, H.173, R.176
- Chain G: N.170, I.172, H.173, R.176
- Ligands: GOL.11
4 PLIP interactions:2 interactions with chain G, 2 interactions with chain D- Hydrogen bonds: G:N.170, G:R.176, D:N.170, D:R.176
GOL.23: 6 residues within 4Å:- Chain C: D.142, Q.145
- Chain G: M.149
- Chain H: L.175, R.176, V.179
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain H- Hydrogen bonds: C:D.142, C:Q.145, H:R.176
GOL.24: 10 residues within 4Å:- Chain C: D.137, N.170, I.172, H.173, R.176
- Chain H: N.170, I.172, H.173, R.176
- Ligands: GOL.8
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain H- Hydrogen bonds: C:N.170, C:R.176, H:N.170, H:R.176
GOL.27: 11 residues within 4Å:- Chain B: D.137, N.170, I.172, H.173, R.176
- Chain I: M.144, N.170, I.172, H.173, R.176
- Ligands: GOL.4
5 PLIP interactions:2 interactions with chain I, 3 interactions with chain B- Hydrogen bonds: I:N.170, I:R.176, B:N.170, B:H.173, B:R.176
GOL.29: 10 residues within 4Å:- Chain A: N.170, I.172, H.173, R.176
- Chain J: D.137, N.170, I.172, H.173, R.176
- Ligands: GOL.2
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain J- Hydrogen bonds: A:N.170, A:R.176, J:N.170, J:R.176
- 10 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 4 residues within 4Å:- Chain B: R.169, N.170
- Chain I: R.169, N.170
5 PLIP interactions:4 interactions with chain I, 1 interactions with chain B- Hydrophobic interactions: I:R.169
- Hydrogen bonds: I:N.170, B:N.170
- Water bridges: I:R.169
- Salt bridges: I:H.173
ACT.9: 5 residues within 4Å:- Chain C: R.169, N.170
- Chain H: R.169, N.170
- Ligands: ACT.25
4 PLIP interactions:3 interactions with chain H, 1 interactions with chain C- Hydrophobic interactions: H:R.169
- Hydrogen bonds: H:N.170, C:N.170
- Water bridges: H:R.169
ACT.14: 4 residues within 4Å:- Chain E: R.169, N.170
- Chain F: R.169, N.170
3 PLIP interactions:1 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:N.170, E:N.170
- Hydrophobic interactions: E:R.169
ACT.15: 5 residues within 4Å:- Chain D: L.119, K.123, Y.157, I.159
- Chain E: M.1
4 PLIP interactions:1 interactions with chain E, 3 interactions with chain D- Hydrogen bonds: E:M.1
- Hydrophobic interactions: D:K.123, D:I.159
- Salt bridges: D:K.123
ACT.16: 3 residues within 4Å:- Chain E: M.144, R.176, I.180
1 PLIP interactions:1 interactions with chain E- Salt bridges: E:R.176
ACT.21: 4 residues within 4Å:- Chain D: R.169, N.170
- Chain G: R.169, N.170
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain G- Hydrophobic interactions: D:R.169
- Hydrogen bonds: D:N.170, G:N.170
- Water bridges: D:D.138, D:R.169
- Salt bridges: D:H.173
ACT.25: 5 residues within 4Å:- Chain C: R.169, N.170
- Chain H: R.169, N.170
- Ligands: ACT.9
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain H- Hydrophobic interactions: C:R.169
- Hydrogen bonds: C:N.170, H:N.170
- Water bridges: C:R.169
ACT.30: 4 residues within 4Å:- Chain A: R.169, N.170
- Chain J: R.169, N.170
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain J- Hydrogen bonds: A:N.170, J:N.170
- Hydrophobic interactions: J:R.169
ACT.31: 5 residues within 4Å:- Chain I: L.119, K.123, Y.157, I.159
- Chain J: M.1
4 PLIP interactions:3 interactions with chain I, 1 interactions with chain J- Hydrophobic interactions: I:K.123, I:I.159
- Salt bridges: I:K.123
- Hydrogen bonds: J:M.1
ACT.32: 3 residues within 4Å:- Chain J: M.144, R.176, I.180
1 PLIP interactions:1 interactions with chain J- Salt bridges: J:R.176
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sautner, V. et al., Large-scale motions underlie physical but not chemical steps in transaldolase mechanism: Substrate binding by conformational selection and rate-determining product release. To Be Published
- Release Date
- 2021-05-12
- Peptides
- Probable transaldolase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x F6R: FRUCTOSE -6-PHOSPHATE(Covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 10 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sautner, V. et al., Large-scale motions underlie physical but not chemical steps in transaldolase mechanism: Substrate binding by conformational selection and rate-determining product release. To Be Published
- Release Date
- 2021-05-12
- Peptides
- Probable transaldolase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E