SMTL ID : 6yrv.1

Crystal structure of FAP after illumination at 100K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 41 residues within 4Å: Chain A: G.14, G.16, T.17, A.18, L.37, E.38, A.39, F.58, W.64, A.82, R.83, G.84, R.85, L.86, G.88, G.89, S.90, S.91, T.93, N.94, A.95, T.96, L.97, M.191, A.220, A.221, V.222, C.264, A.265, G.266, H.269, L.273, N.499, D.533, A.534, Q.544, T.545, G.546, A.547, V.549 Ligands: CO2.3 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:F.58, A:A.82, A:N.94, A:N.499 Hydrogen bonds: A:T.17, A:T.17, A:A.18, A:A.39, A:G.84, A:L.86, A:S.90, A:S.90, A:S.91, A:N.94, A:A.95, A:L.97, A:L.97, A:V.222, A:V.222, A:A.500, A:A.534, A:T.545, A:T.545, A:G.546, A:A.547 Water bridges: A:G.16, A:A.19, A:R.83, A:R.83, A:R.83, A:A.267, A:R.375

1 x PJ8: heptadecane(Non-covalent)

PJ8.2: 17 residues within 4Å: Chain A: A.52, F.58, L.310, I.324, S.353, T.354, V.377, G.379, M.380, A.381, G.386, T.389, Y.390, F.393, T.408, Q.410 Ligands: CO2.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.58, A:L.310, A:I.324, A:V.377, A:V.377, A:Y.390, A:Y.390, A:Y.390, A:F.393, A:F.393, A:F.393, A:Q.410

1 x CO2: CARBON DIOXIDE(Non-covalent)

CO2.3: 8 residues within 4Å: Chain A: I.54, F.58, A.95, R.375, S.498, N.499 Ligands: FAD.1, PJ8.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.375, A:R.375, A:N.499

1 x STE: STEARIC ACID(Non-covalent)

STE.4: 13 residues within 4Å: Chain A: R.46, K.49, I.50, A.52, A.53, T.55, R.56, Y.329, I.335, I.340, Y.343, L.344, F.393 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.46, A:I.50, A:I.335, A:I.340, A:F.393 Hydrogen bonds: A:Y.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorigue, D. et al., Mechanism and dynamics of fatty acid photodecarboxylase. Science (2021)

Release Date

2021-04-21

Peptides

Fatty acid Photodecarboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Fatty acid Photodecarboxylase

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