Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 6yrw.1
(1 other biounit)
SHMT from Streptococcus thermophilus Tyr55Ser variant as internal aldimine and as non-covalent complex with D-Ser
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
15 residues within 4Å:
Chain A:
S.97
,
G.98
,
S.99
,
H.126
,
T.128
,
D.201
,
A.203
,
H.204
,
T.227
,
H.229
,
K.230
Chain B:
E.57
,
G.261
,
G.262
Ligands:
DSN.2
15
PLIP interactions
:
12 interactions with chain A
,
3 interactions with chain B
Hydrophobic interactions:
A:H.126
,
A:A.203
,
A:K.230
Hydrogen bonds:
A:G.98
,
A:S.99
,
A:N.102
,
A:H.204
,
B:E.57
,
B:G.261
,
B:G.262
Water bridges:
A:S.97
,
A:S.97
Salt bridges:
A:H.229
,
A:K.230
pi-Stacking:
A:H.126
PLP.4:
15 residues within 4Å:
Chain A:
G.261
,
G.262
Chain B:
S.97
,
G.98
,
S.99
,
N.102
,
H.126
,
T.128
,
D.201
,
A.203
,
H.204
,
T.227
,
H.229
,
K.230
Ligands:
DSN.5
16
PLIP interactions
:
14 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:A.203
,
B:K.230
Hydrogen bonds:
B:G.98
,
B:S.99
,
B:S.99
,
B:N.102
,
B:H.204
,
A:G.261
,
A:G.262
Water bridges:
B:S.97
,
B:S.97
,
B:H.229
,
B:R.236
Salt bridges:
B:H.229
,
B:K.230
pi-Stacking:
B:H.126
2 x
DSN
:
D-SERINE
(Non-covalent)
DSN.2:
8 residues within 4Å:
Chain A:
S.35
,
H.126
,
S.176
,
H.204
,
K.230
,
R.363
Chain B:
Y.65
Ligands:
PLP.1
8
PLIP interactions
:
6 interactions with chain A
,
2 interactions with chain B
Hydrogen bonds:
A:S.35
,
A:H.126
,
A:S.176
,
B:Y.65
,
B:Y.65
Salt bridges:
A:H.204
,
A:K.230
,
A:R.363
DSN.5:
8 residues within 4Å:
Chain A:
E.57
,
Y.65
Chain B:
S.35
,
H.126
,
S.176
,
H.204
,
R.363
Ligands:
PLP.4
7
PLIP interactions
:
6 interactions with chain B
,
1 interactions with chain A
Hydrogen bonds:
B:S.35
,
B:S.176
,
B:R.363
,
A:Y.65
Salt bridges:
B:H.204
,
B:K.230
,
B:R.363
1 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.3:
3 residues within 4Å:
Chain A:
Y.156
,
D.183
,
K.186
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:D.183
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Petrillo, G. et al., Structural insights into nucleophile substrate specificity in variants of N-Serine hydroxymethyltransferase from Streptococcus thermophilus. To Be Published
Release Date
2020-06-03
Peptides
Serine hydroxymethyltransferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
C
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Serine hydroxymethyltransferase
Toggle Identical (AB)
Related Entries With Identical Sequence
6ti1.1
|
6ti3.1
|
6ti3.2
|
6ti4.1
|
6yrw.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme