SMTL ID : 6ysc.1

GLYCOSYLATED KNOB-HOLE/DUMMY FC FRAGMENT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.1: 16 residues within 4Å: Chain A: F.21, F.23, P.24, P.25, K.26, D.29, E.38, T.40, V.44, D.45, Q.75, Y.76, N.77, T.79, R.81 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.77 Hydrogen bonds: A:F.23, A:K.26, A:D.29, A:E.38, A:E.38, A:E.38, A:K.26 Water bridges: A:K.26 NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.2: 16 residues within 4Å: Chain B: F.21, F.23, P.24, P.25, K.26, E.38, T.40, V.42, V.44, D.45, Q.75, Y.76, N.77, T.79, R.81 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC.1 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.76 Hydrogen bonds: B:F.23, B:K.26, B:K.26, B:E.38, B:E.38, B:T.40, B:T.40, B:K.26, B:T.40 Water bridges: B:D.29, B:E.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dengl, S. et al., Format chain exchange (FORCE) for high-throughput generation of bispecific antibodies in combinatorial binder-format matrices. Nat Commun (2020)

Release Date

2020-10-14

Peptides

Immunoglobulin gamma-1 heavy chain: A
Immunoglobulin gamma-1 heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin gamma-1 heavy chain

Immunoglobulin gamma-1 heavy chain

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