SMTL ID : 6ysn.1

Human TRPC5 in complex with Pico145 (HC-608)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x PJQ: 7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)-8-[3-(trifluoromethyloxy)phenoxy]purine-2,6-dione(Non-covalent)

PJQ.1: 13 residues within 4Å: Chain A: L.902, Y.905, C.906, F.950, L.953, Q.954, F.957, W.958 Chain D: F.980, A.983, T.984, G.987, T.988 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.905, A:F.950, A:L.953, A:F.957 Hydrogen bonds: A:Q.954 pi-Stacking: A:F.957, A:F.957 PJQ.2: 13 residues within 4Å: Chain A: F.980, A.983, T.984, G.987, T.988 Chain B: L.902, Y.905, C.906, F.950, L.953, Q.954, F.957, W.958 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.905, B:F.950, B:L.953, B:F.957 Hydrogen bonds: B:Q.954 pi-Stacking: B:F.957, B:F.957 PJQ.3: 13 residues within 4Å: Chain B: F.980, A.983, T.984, G.987, T.988 Chain C: L.902, Y.905, C.906, F.950, L.953, Q.954, F.957, W.958 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:Y.905, C:F.950, C:L.953, C:F.957 Hydrogen bonds: C:Q.954 pi-Stacking: C:F.957, C:F.957 PJQ.4: 13 residues within 4Å: Chain C: F.980, A.983, T.984, G.987, T.988 Chain D: L.902, Y.905, C.906, F.950, L.953, Q.954, F.957, W.958 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:Y.905, D:F.950, D:L.953, D:F.957 Hydrogen bonds: D:Q.954 pi-Stacking: D:F.957, D:F.957

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, D.J. et al., Human TRPC5 structures reveal interaction of a xanthine-based TRPC1/4/5 inhibitor with a conserved lipid binding site. Commun Biol (2020)

Release Date

2020-12-02

Peptides

Maltose/maltodextrin-binding periplasmic protein,Short transient receptor potential channel 5: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Maltose/maltodextrin-binding periplasmic protein,Short transient receptor potential channel 5