SMTL ID : 6ysy.1

Skeletal Myosin bound to MPH-220, MgADP-VO4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: I.115, N.127, P.128, Y.129, K.130, W.131, Y.135, S.181, G.182, A.183, G.184, K.185, T.186, V.187, N.241, N.243 Ligands: VO4.2, MG.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.127, A:Y.129, A:Y.135, A:G.182, A:A.183, A:G.184, A:K.185, A:T.186, A:T.186, A:V.187, A:N.241 Water bridges: A:T.186, A:N.243, A:S.245 Salt bridges: A:K.185 pi-Stacking: A:W.131

1 x VO4: VANADATE ION(Non-covalent)

VO4.2: 12 residues within 4Å: Chain A: E.180, S.181, G.182, K.185, N.241, S.244, S.245, R.246, A.466, G.467 Ligands: ADP.1, MG.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.182, A:K.185, A:K.185, A:N.241, A:S.244, A:S.245, A:S.245, A:R.246, A:G.467

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: T.186, S.245, D.464 Ligands: ADP.1, VO4.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.186, A:S.245, H2O.1, H2O.1

1 x PJT: (9~{S})-5-methyl-12-(4-morpholin-4-ylphenyl)-9-oxidanyl-4-thia-2,12-diazatricyclo[7.3.0.0^{3,7}]dodeca-1,3(7),5-trien-8-one(Non-covalent)

PJT.4: 19 residues within 4Å: Chain A: R.246, F.247, G.248, Y.269, L.270, L.271, I.465, A.466, L.476, E.477, C.480, I.481, T.484, K.599, N.600, V.650, F.654, L.658, L.661 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.269, A:Y.269, A:Y.269, A:L.270, A:I.465, A:A.466, A:I.481, A:T.484, A:F.654, A:L.658, A:L.661 Hydrogen bonds: A:G.248, A:L.270, A:A.466

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gyimesi, M. et al., Single Residue Variation in Skeletal Muscle Myosin Enables Direct and Selective Drug Targeting for Spasticity and Muscle Stiffness. Cell (2020)

Release Date

2021-03-03

Peptides

Myosin-4: A
Myosin light chain 1/3, skeletal muscle isoform: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Myosin-4

Myosin light chain 1/3, skeletal muscle isoform