SMTL ID : 6yuo.1

Capsule O-acetyltransferase of Neisseria meningitidis serogroup A in complex with caged Gadolinium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: A.39, F.40, S.114, K.115, R.148 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: A.39, F.40, S.114, K.115, R.148 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain C: A.39, F.40, S.114, K.115, R.148 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain D: A.39, F.40, S.114, K.115, R.148 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.222, H.235, Y.239 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.222 EDO.8: 3 residues within 4Å: Chain C: K.222, H.235, Y.239 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.222

4 x GD3: GADOLINIUM ION(Non-functional Binders)

GD3.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GD3.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GD3.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GD3.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain B: N.83, Y.155, M.156, G.158 No protein-ligand interaction detected (PLIP) PEG.11: 4 residues within 4Å: Chain D: N.83, Y.155, M.156, G.158 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiebig, T. et al., Structural and mechanistic basis of capsule O-acetylation in Neisseria meningitidis serogroup A. Nat Commun (2020)

Release Date

2020-08-19

Peptides

SacC: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

SacC

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