SMTL ID : 6yv9.2 (1 other biounit)

Mannosyltransferase PcManGT from Pyrobaculum calidifontis in complex with GDP-Man and Mn2+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GDD: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE(Non-covalent)

GDD.1: 21 residues within 4Å: Chain A: P.50, T.51, Y.52, E.54, V.80, S.82, R.112, G.114, K.115, A.118, D.135, A.136, G.199, G.220, A.221, D.222, D.223, R.260, R.261, H.264 Ligands: MN.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:P.50, A:T.51, A:Y.52, A:Y.52, A:V.80, A:S.82, A:S.82, A:G.114, A:K.115, A:K.115, A:A.136, A:G.199, A:D.222, A:D.223, A:D.223, A:R.261, A:R.261 Salt bridges: A:K.115, A:R.260, A:R.260, A:R.261, A:R.261

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 2 residues within 4Å: Chain A: D.137 Ligands: GDD.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gandini, R. et al., A Transmembrane Crenarchaeal Mannosyltransferase Is Involved in N-Glycan Biosynthesis and Displays an Unexpected Minimal Cellulose-Synthase-like Fold. J.Mol.Biol. (2020)

Release Date

2020-07-22

Peptides

Glycosyl transferase, family 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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Glycosyl transferase, family 2

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