SMTL ID : 6yxs.1

Crystal structure of the apo form of choline kinase from Plasmodium falciparum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: N.235, D.247 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.247, H2O.3, H2O.3, H2O.4, H2O.4

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: S.134, D.136, D.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.134, A:D.137 GOL.3: 7 residues within 4Å: Chain A: V.102, W.167, D.168, K.175, F.226, G.252, Y.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.175, A:Y.253 Water bridges: A:D.168 GOL.4: 10 residues within 4Å: Chain A: R.84, E.99, Y.103, P.113, R.123, E.125, I.246, D.247, F.248, E.249 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.84, A:R.123, A:D.247, A:F.248 Water bridges: A:R.84, A:R.84, A:R.84 GOL.5: 5 residues within 4Å: Chain A: E.126, W.127, L.128, M.237, I.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.126, A:L.128 Water bridges: A:D.247 GOL.6: 6 residues within 4Å: Chain A: R.110, I.111, V.150, L.243, R.244, L.245 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.110, A:L.243, A:L.245 GOL.7: 3 residues within 4Å: Chain A: R.159, D.223, L.304 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.159, A:D.223 Water bridges: A:D.305

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.8: 6 residues within 4Å: Chain A: Y.286, R.292, E.324, E.366, Q.367, Y.370 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.292, A:R.292, A:Y.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torretta, A. et al., Crystal Structure of the Apo and the ADP-Bound Form of Choline Kinase from Plasmodium falciparum. Crystals (2020)

Release Date

2020-08-05

Peptides

Choline kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Choline kinase

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