SMTL ID : 6yyl.1 (1 other biounit)

Crystal structure of S. pombe Mei2 RRM3 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: K.39, F.40, T.41, I.64, K.69, N.71 No protein-ligand interaction detected (PLIP) PEG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PEG.8: 4 residues within 4Å: Chain A: D.17, Y.18, A.19, K.90 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.17, A:Y.18, A:A.19, A:K.90, A:K.90 Water bridges: A:D.17

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: K.116, V.141, S.142, H.143, E.151 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.116, A:S.142, A:H.143, A:E.151 EDO.3: 5 residues within 4Å: Chain A: V.16, Y.18, V.93, D.107, I.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.18, A:D.107 Water bridges: A:Y.18 EDO.4: 3 residues within 4Å: Chain A: D.12, N.14, S.109 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.14 EDO.5: 6 residues within 4Å: Chain A: T.29, D.58, N.78, F.79, I.80, K.116 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.29, A:N.78, A:S.142, A:S.142 Water bridges: A:K.116 EDO.6: 2 residues within 4Å: Chain A: T.27, R.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.27

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 4 residues within 4Å: Chain A: P.37, N.38, S.102, K.104 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.38 Water bridges: A:K.39, A:E.103 Salt bridges: A:K.104 SO4.10: 4 residues within 4Å: Chain A: S.142, H.143, G.144, R.147 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.144 Water bridges: A:E.81, A:E.81 Salt bridges: A:H.143, A:R.147 SO4.11: 2 residues within 4Å: Chain A: R.124, P.154 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.124 SO4.12: 2 residues within 4Å: Chain A: D.12, R.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.13, A:R.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andric, V. et al., A scaffold lncRNA shapes the mitosis to meiosis switch. Nat Commun (2021)

Release Date

2020-12-23

Peptides

Meiosis protein mei2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Meiosis protein mei2

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