SMTL ID : 6z00.2 (1 other biounit)

Arabidopsis thaliana Naa50 in complex with bisubstrate analogue CoA-Ac-MVNAL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x MET- VAL- ASN- ALA- LEU: MET-VAL-ASN-ALA-LEU(Non-covalent)

MET-VAL-ASN-ALA-LEU.1: 14 residues within 4Å: Chain A: F.30, P.31, V.32, R.33, Y.34, N.35, I.78, M.79, H.115, Q.117, Y.141, Y.142, I.145 Ligands: CMC.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.32, A:Y.34, A:M.79, A:Y.141, A:Y.142 Hydrogen bonds: A:N.35, A:M.79, A:H.115, A:Y.141, A:Y.141, A:Y.141, A:Y.142 Water bridges: A:H.115, A:H.115

1 x CMC: CARBOXYMETHYL COENZYME *A(Non-covalent)

CMC.2: 21 residues within 4Å: Chain A: F.30, M.79, T.80, L.81, G.82, V.83, R.88, G.89, I.90, G.91, I.92, G.93, S.94, H.115, V.116, N.120, D.122, F.126, Y.127, K.129 Ligands: MET-VAL-ASN-ALA-LEU.1 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.81 Hydrogen bonds: A:L.81, A:L.81, A:V.83, A:G.89, A:G.91, A:G.91, A:I.92, A:G.93, A:S.94, A:N.120 Water bridges: A:R.88, A:R.88, A:R.88, A:I.90, A:S.94, A:D.122, A:A.123, A:F.126 Salt bridges: A:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weidenhausen, J. et al., Structural and functional characterization of the N-terminal acetyltransferase Naa50. Structure (2021)

Release Date

2020-12-30

Peptides

Acyl-CoA N-acyltransferases (NAT) superfamily protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Acyl-CoA N-acyltransferases (NAT) superfamily protein

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