SMTL ID : 6z01.1

DNA Topoisomerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: R.269, V.270, G.271, D.272, E.273 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: G.148, R.149, G.150, N.151, H.152, R.155 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: A.512, S.513 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: S.513 Chain B: R.488, L.518 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: L.14, Y.163, E.164 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: V.140, E.141, W.197 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: R.269, V.270, G.271, D.272, E.273 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: R.488, W.494, R.495 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain B: Y.53, G.150, M.230, N.233, H.234 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain B: A.136, N.137, W.138, M.139 Ligand excluded by PLIP CL.11: 6 residues within 4Å: Chain B: G.148, R.149, G.150, N.151, H.152, R.155 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain B: M.253, R.352, F.353, K.356 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takahashi, D.T. et al., Topoisomerase I (TOP1) dynamics: conformational transition from open to closed states. Nat Commun (2022)

Release Date

2021-11-17

Peptides

DNA topoisomerase I: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA topoisomerase I

Related Entries With Identical Sequence