SMTL ID : 6z0u.1

CryoEM structure of the Chikungunya virus nsP1 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

24 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.79, A:E.129, A:C.134, A:C.141 ZN.2: 5 residues within 4Å: Chain B: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.79, B:E.129, B:C.134, B:C.141 ZN.3: 5 residues within 4Å: Chain C: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.79, C:E.129, C:C.134, C:C.141 ZN.4: 5 residues within 4Å: Chain D: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.79, D:E.129, D:C.134, D:C.141 ZN.5: 5 residues within 4Å: Chain E: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.79, E:E.129, E:C.134, E:C.141 ZN.6: 5 residues within 4Å: Chain F: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.79, F:E.129, F:C.134, F:C.141 ZN.7: 5 residues within 4Å: Chain G: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.79, G:E.129, G:C.134, G:C.141 ZN.8: 5 residues within 4Å: Chain H: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.79, H:E.129, H:C.134, H:C.141 ZN.9: 5 residues within 4Å: Chain I: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.79, I:E.129, I:C.134, I:C.141 ZN.10: 5 residues within 4Å: Chain J: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:H.79, J:E.129, J:C.134, J:C.141 ZN.11: 5 residues within 4Å: Chain K: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.79, K:E.129, K:C.134, K:C.141 ZN.12: 5 residues within 4Å: Chain L: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.79, L:E.129, L:C.134, L:C.141 ZN.13: 5 residues within 4Å: Chain M: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:H.79, M:E.129, M:C.134, M:C.141 ZN.14: 5 residues within 4Å: Chain N: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:H.79, N:E.129, N:C.134, N:C.141 ZN.15: 5 residues within 4Å: Chain O: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:H.79, O:E.129, O:C.134, O:C.141 ZN.16: 5 residues within 4Å: Chain P: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:H.79, P:E.129, P:C.134, P:C.141 ZN.17: 5 residues within 4Å: Chain Q: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:H.79, Q:E.129, Q:C.134, Q:C.141 ZN.18: 5 residues within 4Å: Chain R: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:H.79, R:E.129, R:C.134, R:C.141 ZN.19: 5 residues within 4Å: Chain S: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:H.79, S:E.129, S:C.134, S:C.141 ZN.20: 5 residues within 4Å: Chain T: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:H.79, T:E.129, T:C.134, T:C.141 ZN.21: 5 residues within 4Å: Chain U: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:H.79, U:E.129, U:C.134, U:C.141 ZN.22: 5 residues within 4Å: Chain V: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain V Metal complexes: V:H.79, V:E.129, V:C.134, V:C.141 ZN.23: 5 residues within 4Å: Chain W: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:H.79, W:E.129, W:C.134, W:C.141 ZN.24: 5 residues within 4Å: Chain X: H.79, E.129, C.134, C.141, Q.143 4 PLIP interactions: 4 interactions with chain X Metal complexes: X:H.79, X:E.129, X:C.134, X:C.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, R. et al., Capping pores of alphavirus nsP1 gate membranous viral replication factories. Nature (2021)

Release Date

2020-10-14

Peptides

Polyprotein P1234: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
G

E
I

F
K

G
M

H
O

I
Q

J
S

K
V

L
X

M
Z

N
BA

O
DA

P
FA

Q
HA

R
JA

S
LA

T
NA

U
PA

V
RA

W
TA

X
VA

Polyprotein P1234

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