SMTL ID : 6z20.2 (1 other biounit)

Structure of the EC2 domain of CD9 in complex with nanobody 4C8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain B: G.52, W.53, S.54, G.55, D.56, L.57 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain B: Y.60, V.64, K.65, G.66, R.67, F.68, T.69 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.66, B:R.67, B:F.68, B:F.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oosterheert, W. et al., Implications for tetraspanin-enriched microdomain assembly based on structures of CD9 with EWI-F. Life Sci Alliance (2020)

Release Date

2020-09-23

Peptides

CD9 antigen: A
Nanobody 4C8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

CD9 antigen

Nanobody 4C8

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