SMTL ID : 6z2s.1

Crystal structure of adhibin analogue-bound myosin-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.197, S.248, D.465 Ligands: AD9.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.197, A:S.248, H2O.1, H2O.1

1 x Q5Q: 3,6-dibromo-1-(hydroxymethyl)carbazole(Non-covalent)

Q5Q.2: 13 residues within 4Å: Chain A: L.273, L.274, E.275, K.276, S.277, R.278, S.476, F.477, E.478, W.595, K.598, N.599, V.641 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.276, A:F.477, A:E.478, A:V.641 Hydrogen bonds: A:S.476, A:F.477, A:E.478, A:K.598

1 x AD9: ADP METAVANADATE

AD9.3: 27 residues within 4Å: Chain A: I.126, N.138, P.139, F.140, K.141, R.142, I.143, Y.146, E.191, S.192, G.193, A.194, G.195, K.196, T.197, E.198, T.241, N.244, N.246, S.247, S.248, R.249, I.466, S.467, G.468, E.470 Ligands: MG.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:N.138, A:Y.146, A:G.193, A:A.194, A:G.195, A:K.196, A:K.196, A:T.197, A:T.197, A:E.198, A:N.244, A:S.247, A:S.248, A:R.249, A:G.468, A:E.470, A:E.470 Water bridges: A:T.197, A:N.246, A:N.246, A:S.248 Salt bridges: A:K.196

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: T.67, D.69, S.70, Q.82, K.84 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.67, A:T.67 Water bridges: A:K.84 Salt bridges: A:K.84 ACT.7: 5 residues within 4Å: Chain A: K.488, Q.491, F.492, M.653, E.657 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:M.653 Salt bridges: A:K.488 ACT.8: 9 residues within 4Å: Chain A: S.271, Y.272, L.273, L.274, K.276, G.438, F.441, L.442, Q.648 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.271

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: W.443, N.450, K.621 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.443 GOL.6: 7 residues within 4Å: Chain A: A.435, R.439, D.601, P.602, L.603, A.629, R.631 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.439, A:R.439, A:D.601, A:A.629 GOL.9: 2 residues within 4Å: Chain A: D.17, S.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.20 GOL.10: 3 residues within 4Å: Chain A: K.557, S.560, H.561 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.560 GOL.11: 4 residues within 4Å: Chain A: W.47, C.60, R.91, H.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bader, A. et al., The synthetic carbazole adhibin acts as selective myosin class-IX inhibitor in lung cancer cells. To Be Published

Release Date

2021-06-09

Peptides

Myosin-2 heavy chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myosin-2 heavy chain

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